Boyack KW, Mane K, Borner K "Mapping medline papers, genes, and proteins related to melanoma research" Eighth International Conference on Information Visualization, Proceedings. IEEE Conference on Information Visualization - Proceedings 9

[Boyack, Kevin W]

Gene and friends,

The Pubmedcentral URL listed below links to my PNAS article from this
past spring.

Two correct URLs for the IEEE IV article are
http://csdl.computer.org/comp/proceedings/iv/2004/2177/00/21770965abs.ht
m OR
http://ella.slis.indiana.edu/~katy/paper/04-iv-melanoma.pdf
rather than that given below.

Best regards,
Kevin


-----Original Message-----
From: ASIS&T Special Interest Group on Metrics
[mailto:SIGMETRICS at LISTSERV.UTK.EDU] On Behalf Of Eugene Garfield
Sent: Tuesday, November 16, 2004 11:17 AM
To: SIGMETRICS at LISTSERV.UTK.EDU
Subject: [SIGMETRICS] Boyack KW, Mane K, Borner K "Mapping medline
papers, genes, and proteins related to melanoma research" Eighth
International Conference on Information Visualization, Proceedings. IEEE
Conference on Information Visualization - Proceedings 965-9


Kevin W. Boyack : boyack at viswave.com
Ketan Mane : kmane at indiana.edu
Katy Borner: katy at indiana.edu

FULL TEXT AVAILABLE AT :
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid
=14963238

TITLE    :   Mapping medline papers, genes, and proteins related to
melanoma
             research
AUTHOR   :   Boyack KW, Mane K, Borner K

SOURCE    :  EIGHTH INTERNATIONAL CONFERENCE ON INFORMATION
VISUALISATION,
             PROCEEDINGS
Editors: Banissi E, Borner K, Chen C, Dastbaz M, Clapworthy G, Faiola A,
Izquierdo E, Maple C, Roberts J, Moore C, Ursyn A, Zhang JJ IEEE
CONFERENCE ON INFORMATION VISUALIZATION - PROCEEDINGS 965-971, 2004

Document Type: Article     Language: English     Cited References: 12
Related Records
 ISI Web of Science for Citing Articles

Conference Information:
8th International Conference on Information Visualisation London,
ENGLAND, JUL 14-16, 2004

Abstract:
What is the structure of the research reported on melanoma? How has it
evolved over the last 40 years? Which parts of this research field are
correlated with the study of genes and proteins? Are there sudden
increases in the number of occurrences of certain gene or protein names,
reflecting a surge of interest? How are genes, protein and papers
interconnected via co-occurrence patterns?

This paper aims to provide answers to these questions by analyzing a
data set consisting of papers from Medline, genes from the Entrez Gene
database, and proteins from UniProt. Word burst detection and
co-occurrence analyses were both performed. The spatial layout algorithm
VxOrd was applied to create the very first map that shows papers, genes,
and proteins and their co-occurrence relationships. The results were
validated by five domain experts leading to a number of interesting
facts pertaining to structure and dynamics of the melanoma research
field.

KeyWords Plus:
DISCOVERY

Addresses:
Boyack KW, VisWave LLC, Albuquerque, NM 87122 USA
VisWave LLC, Albuquerque, NM 87122 USA

Publisher:
IEEE COMPUTER SOC, 10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS,
CA 90720-1264 USA

IDS Number:
BAQ15

ISSN:
1093-9547

ISBN:
0-7695-2177-0

Cited References:
   ADAMIC LA, 2002, IEEE COMPUER SOC BIO, P1109
   BORNER K, 2003, ANNU REV INFORM SCI, V37, P179
   BOYACK KW, 2000, NEW PAR INF VIS MAN
   BOYACK KW, 2002, J AM SOC INF SCI TEC, V53, P764
   CARD S, 1999, READINGS INFORMATION
   DAVIDSON GS, 2001, 7 IEEE S INF VIS INF, P23
   KIM SK, 2001, SCIENCE, V293, P2087
   KLEINBERG JM, 2002, 8 ACM SIGKDD INT C K, P91
   MACK R, 2002, DRUG DISCOV TODAY S, V7, PS89
   SWANSON DR, 2001, J AM SOC INF SCI TEC, V52, P797
   WERNERWASHBURNE M, 2002, GENOME RES, V12, P1564
   WYLIE BN, 2002, 6424965, US