Boyack KW, Mane K, Borner K "Mapping medline papers, genes, and proteins related to melanoma research" Eighth International Conference on Information Visualization, Proceedings. IEEE Conference on Information Visualization - Proceedings 9

[Katy Borner]

Boyack, Kevin W wrote:

>Gene and friends,
>
>The Pubmedcentral URL listed below links to my PNAS article from this
>past spring.
>
>Two correct URLs for the IEEE IV article are
>http://csdl.computer.org/comp/proceedings/iv/2004/2177/00/21770965abs.ht
>m
>
This IEEE entry misspells Indiana University
When will we ever be able to take better care of our data?

>OR
>http://ella.slis.indiana.edu/~katy/paper/04-iv-melanoma.pdf
>rather than that given below.
>
The corresponding poster can be found at
http://ella.slis.indiana.edu/~katy/gallery/04p-melanoma.pdf :)

I would like to hear about other research that correlates paper, gene,
and protein data.
Regards,
k

>
>Best regards,
>Kevin
>
>
>-----Original Message-----
>From: ASIS&T Special Interest Group on Metrics
>[mailto:SIGMETRICS at LISTSERV.UTK.EDU] On Behalf Of Eugene Garfield
>Sent: Tuesday, November 16, 2004 11:17 AM
>To: SIGMETRICS at LISTSERV.UTK.EDU
>Subject: [SIGMETRICS] Boyack KW, Mane K, Borner K "Mapping medline
>papers, genes, and proteins related to melanoma research" Eighth
>International Conference on Information Visualization, Proceedings. IEEE
>Conference on Information Visualization - Proceedings 965-9
>
>
>Kevin W. Boyack : boyack at viswave.com
>Ketan Mane : kmane at indiana.edu
>Katy Borner: katy at indiana.edu
>
>FULL TEXT AVAILABLE AT :
>http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid
>=14963238
>
>TITLE    :   Mapping medline papers, genes, and proteins related to
>melanoma
>             research
>AUTHOR   :   Boyack KW, Mane K, Borner K
>
>SOURCE    :  EIGHTH INTERNATIONAL CONFERENCE ON INFORMATION
>VISUALISATION,
>             PROCEEDINGS
>Editors: Banissi E, Borner K, Chen C, Dastbaz M, Clapworthy G, Faiola A,
>Izquierdo E, Maple C, Roberts J, Moore C, Ursyn A, Zhang JJ IEEE
>CONFERENCE ON INFORMATION VISUALIZATION - PROCEEDINGS 965-971, 2004
>
>Document Type: Article     Language: English     Cited References: 12
>Related Records
> ISI Web of Science for Citing Articles
>
>Conference Information:
>8th International Conference on Information Visualisation London,
>ENGLAND, JUL 14-16, 2004
>
>Abstract:
>What is the structure of the research reported on melanoma? How has it
>evolved over the last 40 years? Which parts of this research field are
>correlated with the study of genes and proteins? Are there sudden
>increases in the number of occurrences of certain gene or protein names,
>reflecting a surge of interest? How are genes, protein and papers
>interconnected via co-occurrence patterns?
>
>This paper aims to provide answers to these questions by analyzing a
>data set consisting of papers from Medline, genes from the Entrez Gene
>database, and proteins from UniProt. Word burst detection and
>co-occurrence analyses were both performed. The spatial layout algorithm
>VxOrd was applied to create the very first map that shows papers, genes,
>and proteins and their co-occurrence relationships. The results were
>validated by five domain experts leading to a number of interesting
>facts pertaining to structure and dynamics of the melanoma research
>field.
>
>KeyWords Plus:
>DISCOVERY
>
>Addresses:
>Boyack KW, VisWave LLC, Albuquerque, NM 87122 USA
>VisWave LLC, Albuquerque, NM 87122 USA
>
>Publisher:
>IEEE COMPUTER SOC, 10662 LOS VAQUEROS CIRCLE, PO BOX 3014, LOS ALAMITOS,
>CA 90720-1264 USA
>
>IDS Number:
>BAQ15
>
>ISSN:
>1093-9547
>
>ISBN:
>0-7695-2177-0
>
>Cited References:
>   ADAMIC LA, 2002, IEEE COMPUER SOC BIO, P1109
>   BORNER K, 2003, ANNU REV INFORM SCI, V37, P179
>   BOYACK KW, 2000, NEW PAR INF VIS MAN
>   BOYACK KW, 2002, J AM SOC INF SCI TEC, V53, P764
>   CARD S, 1999, READINGS INFORMATION
>   DAVIDSON GS, 2001, 7 IEEE S INF VIS INF, P23
>   KIM SK, 2001, SCIENCE, V293, P2087
>   KLEINBERG JM, 2002, 8 ACM SIGKDD INT C K, P91
>   MACK R, 2002, DRUG DISCOV TODAY S, V7, PS89
>   SWANSON DR, 2001, J AM SOC INF SCI TEC, V52, P797
>   WERNERWASHBURNE M, 2002, GENOME RES, V12, P1564
>   WYLIE BN, 2002, 6424965, US
>
>

--
Katy Borner, Assistant Professor
Information Science & Cognitive Science
Indiana University, SLIS
10th Street & Jordan Avenue     Phone:  (812) 855-3256   Fax: -6166
Main Library 019                E-mail: katy at indiana.edu
Bloomington, IN 47405, USA      WWW:    ella.slis.indiana.edu/~katy

Check out the new InfoVis Lab Gallery at
http://ella.slis.indiana.edu/~katy/gallery/