Eller GA "Improving the quality of published chemical names with nomenclature software" Molecules 11(11): November 2006
Eugene Garfield
garfield at CODEX.CIS.UPENN.EDU
Fri Feb 2 14:16:56 EST 2007
E-mail Addresses: gernot.eller at univie.ac.at
________________________________________________________________________
FULL TEXT AVAILABLE AT : http://www.mdpi.org/molecules/papers/11110915.pdf
-------------------------------------------------------------------------
Title: Improving the quality of published chemical names with nomenclature
software
Author(s): Eller GA (Eller, Gernot A.)
Source: MOLECULES 11 (11): NOV 2006
Document Type: Article
Language: English
Cited References: 46 Times Cited: 0
Abstract: This work deals with the use of organic systematic nomenclature
in scientific literature, its quality, and computerized methods for its
improvement. Criteria for classification of systematic names in terms of
quality/correctness are discussed and applied to a sample set of several
hundred names extracted from the literature. The same structures are named
with three popular state-of-the-art nomenclature programs - AutoNom 2000,
ChemDraw 10.0, and ACD/Name 9.0. When comparing the results, all
nomenclature tools show a significantly better performance than 'average
chemists'. One program allows the generation not only of IUPAC names but
also of CAS-like index names that are compared with the officially
registered names. The scope and limitations of nomenclature software are
discussed and a comparison of the programs' actual capabilities is given.
Addresses: Eller GA (reprint author), Univ Vienna, Fac Life Sci, Dept Drug
Synth, Althanstr 14, A-1090 Vienna, Austria
Univ Vienna, Fac Life Sci, Dept Drug Synth, A-1090 Vienna, Austria
E-mail Addresses: gernot.eller at univie.ac.at
Publisher: MOLECULAR DIVERSITY PRESERVATION INTERNATIONAL, MATTHAEUSSTRASSE
11, CH-4057 BASEL, SWITZERLAND
Subject Category: Chemistry, Organic
IDS Number: 118VN
ISSN: 1420-3049
CITED REFERENCES:
J ORG CHEM 71 : A1 2006
J ORGANIC CHEM GUIDE : 2006
*ADV CHEM DEV INC
ACD NAM VERS 9 08 : 2006
*CAMBR SOFT CORP
CHEMDRAW ULTRA 10 0 : 2005
*CHEM INN SOFTW IN
NOM : 2006
*INT UN PUR APPL C
NOM ORG CHEM A : 1979
*INT UN PUR APPL C
NOM ORG CHEM B : 1979
*INT UN PUR APPL C
NOM ORG CHEM C : 1979
*INT UN PUR APPL C
NOM ORG CHEM D : 1979
*INT UN PUR APPL C
NOM ORG CHEM E : 1979
*INT UN PUR APPL C
NOM ORG CHEM F : 1979
*INT UN PUR APPL C
NOM ORG CHEM H : 1979
*ISIS
ISIS DRAW 2 5 AUTONO : 2002
*IUPAC
GUID IUPAC NOM ORG C : 1993
*IUPAC NAM
BIO RAD LAB
*OPEN EYE SCI SOFT
LEX VERS 1 5 : 2006
*SCI SERV GMBH
SCI SERV IS LOC ACD
BRECHER J
Name=Struct: A practical approach to the sorry state of real-life chemical
nomenclature
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 39 : 943 1999
CAHN RS
SPECIFICATION OF MOLECULAR CHIRALITY
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 5 : 385 1966
COZZI F
Numbering of fullerenes - (IUPAC Recommendations 2005)
PURE AND APPLIED CHEMISTRY 77 : 843 2005
ENGEL T
Valences, bonds and orbitls - Structural editors
NACHRICHTEN AUS DER CHEMIE 51 : 450 2003
FAVRE HA
NOMENCLATURE ORGANIC
FAVRE HA
Phane nomenclature. Part II. Modification of the degree of hydrogenation
and substitution derivatives of phane parent hydrides - (IUPAC
Recommendations 2002)
PURE AND APPLIED CHEMISTRY 74 : 809 2002
FAVRE HA
PURE APPL CHEM 71 : 1327 1999
FENNELL RW
HIST IUPAC 1919 1987 : 1994
GARFIELD E
CHEMICO-LINGUISTICS - COMPUTER TRANSLATION OF CHEMICAL NOMENCLATURE
NATURE 192 : 192 1961
GOEBELS L
AUTONOM - SYSTEM FOR COMPUTER TRANSLATION OF STRUCTURAL DIAGRAMS INTO IUPAC-
COMPATIBLE NAMES .2. NOMENCLATURE OF CHAINS AND RINGS
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 31 : 216 1991
HELLWICH KH
CHEM NOMENKLATUR : 2002
HELLWINKEL D
SYSTEMATIC NOMENCLAT : 2001
IRWIN JJ
J CHEM INF MODEL 45 : 1469 2005
KIRBY GH
SYSTEMATIC CHEMICAL NOMENCLATURES IN THE COMPUTER-AGE
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 33 : 560 1993
KOCH R
Nomenclature in chemistry: The next generation
NACHRICHTEN AUS DER CHEMIE 48 : 642 2000
LI ZJ
Personal experience with four kinds of chemical structure drawing software:
Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 44 : 1886 2004
MALDONADO AG
Molecular similarity and diversity in chemoinformatics: From theory to
applications
MOLECULAR DIVERSITY 10 : 39 2006
MENDELSOHN LD
ChemDraw 8 Ultra, Windows and Macintosh versions
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 44 : 2225 2004
MOSS GP
PURE APPL CHEM 70 : 43 1998
PANICO R
CHEM ABSTR 297652 120 : 1993
SELLIAH RD
IUPAC Name Pro 4.5 with name to structure module.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 123 : 6463 2001
VOGT J
NACHR CHEM 53 : 428 2005
WAGNER BA
J CHEM INF MODEL 46 : 767 2006
WILLETT P
Chemical similarity searching
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 38 : 983 1998
WILLIAMS A
The need for systematic naming software tools for exchange of chemical
information
MOLECULES 4 : 255 1999
WISNIEWSKI JL
HYPERNEWS 2 : 22 1997
WISNIEWSKI JL
AUTONOM - SYSTEM FOR COMPUTER TRANSLATION OF STRUCTURAL DIAGRAMS INTO IUPAC-
COMPATIBLE NAMES .1. GENERAL DESIGN
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES 30 : 324 1990
YERIN A
UNPUB PURE APPL CHEM
ZIELESNY A
Chemistry software package ChemOffice Ultra 2005
JOURNAL OF CHEMICAL INFORMATION AND MODELING 45 : 1474 2005
More information about the SIGMETRICS
mailing list